BtaEX0005337 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26800661-26802264:-
Coord C1 exon
chr2:26802181-26802264
Coord A exon
chr2:26801224-26801247
Coord C2 exon
chr2:26800661-26801074
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTCGTCTTATAGGCT
3' ss Score
8.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCGCAGCCCCTTGAAGCTCTGACCGTAAAACAAATTCAAGACGATGTAGAGATCGACTCTGATGATCACACGGATGCTTTTGTG
Seq A exon
GCTTATTTTGCTGATGGCAACAAG
Seq C2 exon
CAACAAGATCGTGAACCTGTGTTTTCAGAAGAACTGGGGCTTGCAATAGAGAAATTGAAGGATGGATTCACCCTACAGGGACTTTGGGAAGTAATGAATTGATCTTGAGTTGAGCTGAATTTCTATTTACAGATATCTCAAGATTAAAGATACTAGTCGCCTACTATAAGGCATGGAATAGTTTTTACATTTACAGAAAAAGTTTTTAAGAGAGTTTTCTAATGATTAAGGAAAAGCTCCTTTAAGATTTTACTGCCAGTCTTCTAAAAAAATTCTATTTGAAATTGTAATCGAAATCTTCCTGGTTTGTTGTAAATATGTTTATTTTGTACCTAGTACTTACAAATTATTATTCTGTGGATATTAAAAGACTGTATTATATTGAGCTTAATAAAGAGTTTATGTAGCACCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.1=100)
A:
PF072896=DUF1448=FE(2.1=100)
C2:
PF072896=DUF1448=PD(9.3=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTGAAGCTCTGACCGTA
R:
GCCCCAGTTCTTCTGAAAACAC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development