GgaEX1010618 @ galGal4
Exon Skipping
Gene
ENSGALG00000009846 | BBS5
Description
Bardet-Biedl syndrome 5 protein [Source:RefSeq peptide;Acc:NP_001238960]
Coordinates
chr7:18171747-18173419:-
Coord C1 exon
chr7:18173336-18173419
Coord A exon
chr7:18171955-18171978
Coord C2 exon
chr7:18171747-18171848
Length
24 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCTTTCTCTTATAGGCT
3' ss Score
10.94
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCTCAATCTCTTGAAGACCTAACAGTGGAGCAGGTTCAAGATGATGTGGAGATAGAACCTGGTGAACAGACAGATGCTTTTGTG
Seq A exon
GCTTACTTTGCTGATGAAAACAAG
Seq C2 exon
CAACATGATCGGGAGCCTGTGTTTTCAGAAGAACTAGGACTTGCAGTAGAGAAGCTAAAGGATGGATTCACGCTCCAGGGGCTCTGGGAAGTAATGACCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'23-17,'23-16,24-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.1=100)
A:
PF072896=DUF1448=FE(2.1=100)
C2:
PF072896=DUF1448=PD(9.3=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCTAACAGTGGAGCAGG
R:
TTCTGAAAACACAGGCTCCCG
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]