MmuEX1005087 @ mm10
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69665026-69667318:+
Coord C1 exon
chr2:69665026-69665109
Coord A exon
chr2:69666941-69666964
Coord C2 exon
chr2:69667104-69667318
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTTTATCTTATAGGCG
3' ss Score
10.73
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG
Seq A exon
GCGTATTTTGCTGATGGGAATAAG
Seq C2 exon
CAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGAAGTGATGAGTTGATCTTGAGTTGTTGGATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGACCTCTATTTAAAGATATCTCAAGATTAAAAGATACTGCTTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
80%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PD(14.8=13.8),PF072896=DUF1448=FE(40.0=100)
A:
PF072896=DUF1448=FE(11.4=100)
C2:
PF072896=DUF1448=PD(23.0=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATGACCACACGGATGC
R:
CCCTGCAGTGTGAATCCATCC
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types