DreEX0016687 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48587211-48589330:-
Coord C1 exon
chr9:48589247-48589330
Coord A exon
chr9:48588953-48588976
Coord C2 exon
chr9:48587211-48587629
Length
24 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTTTTCATCTCAAGGCT
3' ss Score
8.36
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCTCAGCCCCTGGAGGAGCTGACCGTAGAGCAGCCGCCTGATGACGTGGAGATTGAGCCGGATGAGCACACGGATGCTTTTACT
Seq A exon
GCTTATTTTGCAGATGGAAACAAG
Seq C2 exon
CAACACGATCGTGAGCCGGTGTTTTCTGAAGAACTGGGTTTGGCAATAGAGAAACTGAAAGATGGATTTACCCTTCAGGGACTCTGGGAAGTCATGGGTTGACATGCGCAAACACTGTTGTGTATTGAGGCATTGCATTGTTGTTTACATCCAACATCAAGAGTTTTCATTAGAATTTTGTATTTATTTTCAGAATATTAATTTAATTTTGATAAAGATGTATGTTTACAAATCATGAGGACCAAATTTAAGAAAAAATCGTGGGGGAAAAAGTTTAATATGAATGTATATGTACAAGCAGAAACATGTATGTATTTAATAGATTTATTTGTAAACTGTTAAGATTACTTATATAGTGAAAGTTACATGATGACTTTGCTGTTGTTATGTAGTAATAAAATTATTACAAAATGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.500 C2=0.091
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.1=100)
A:
PF072896=DUF1448=FE(2.1=100)
C2:
PF072896=DUF1448=PD(9.3=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCACACGGATGCTTT
R:
ACTTCCCAGAGTCCCTGAAGG
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]