RnoEX0014246 @ rn6
Exon Skipping
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55906368-55907716:+
Coord C1 exon
chr3:55906368-55906451
Coord A exon
chr3:55907143-55907166
Coord C2 exon
chr3:55907305-55907716
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCTTATGTTATAGGCT
3' ss Score
10.01
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG
Seq A exon
GCTTACTTTGCTGATGGGAATAAG
Seq C2 exon
CAACAAGACCGTGAACCTGTATTTTCAGAAGAGCTGGGGCTTGCCATAGAGAAGCTGAAGGACGGAGTCACACTACAGGGGCTTTGGGAAGTGATGAGTTGATCTTGAGTTGAGCTGGATCTCTGTTTAAAGATATCTCACGATTAAAAGATACTGCTTGCCTGCTATAGGCATGAGACAGTTATCTATTTATAGCTTTTATATTTTATATTTTAAGACTTTTTAATAATTAAGGAAAAACTCCTTAATTTTAGAAAACTATCAGTTTTCTAAAAGTTACATTAAAAATTGTAACTGAAATGTACCAGATCTATAAATGTAAATATTGTACCTGACACTTGTAAAAATAGTAATTTTCAGATATTAAACAATTGTATCATGTTGCATTTAATAAAGATTTTTATGCAGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.1=100)
A:
PF072896=DUF1448=FE(2.1=100)
C2:
PF072896=DUF1448=PD(9.3=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATGACCACACGGATGC
R:
CCTGTAGTGTGACTCCGTCCT
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]