BtaEX0005339 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26807837-26813030:-
Coord C1 exon
chr2:26812895-26813030
Coord A exon
chr2:26811788-26811883
Coord C2 exon
chr2:26807837-26807899
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCATCATTCTCCTTTACAGGGA
3' ss Score
10.1
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCATATGAAACTTCTAAAATGTATCGTGATTTTAAATTGAGAAGTGCTCTAATTCAAAATAAGCAACTAAGATTATTACCACAAGAAAATGTATATAATAAAATCAATGGAGTATGGAATTTATCAAGTGATCAG
Seq A exon
GGAAATTTAGGAACCTTTTTTATTACCAATGTGAGAATCGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGTATACCATATCTGCAAATT
Seq C2 exon
CGGTCAGTAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.4=100)
A:
PF072896=DUF1448=FE(9.3=100)
C2:
PF072896=DUF1448=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGATTTTAAATTGAGAAGTGCT
R:
CTGCTGAGAGCTTTCTATGACA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development