RnoEX0014253 @ rn6
Exon Skipping
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55895975-55902060:+
Coord C1 exon
chr3:55895975-55896110
Coord A exon
chr3:55898290-55898385
Coord C2 exon
chr3:55901998-55902060
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCTTTCTTCTGCAGGGG
3' ss Score
12.48
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
AGCCTATGAAACATCTAAAATGTACCGTGATTTTAAGCTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTATTACCACAGGAACATGTGTATGATAAGATCAATGGTGTGTGGAATTTATCCAGCGACCAG
Seq A exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGCATACCATACCTGCAAATC
Seq C2 exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGCTTGGCTCTTGTCATAGAAAGCTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127_MULTIEX1-5/6=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(24.3=100),PF036948=Erg28=FE(61.6=100)
A:
PF072896=DUF1448=FE(13.8=100)
C2:
PF072896=DUF1448=FE(6.0=100)
Main Skipping Isoform:
ENSRNOT00000009396fB1923
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGATTTTAAGCTGAGAAGTGC
R:
AGCTTTCTATGACAAGAGCCAAGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]