MmuEX0007745 @ mm9
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69493556-69499155:+
Coord C1 exon
chr2:69493556-69493691
Coord A exon
chr2:69494954-69495049
Coord C2 exon
chr2:69499093-69499155
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCTTCTGCAGGGG
3' ss Score
12.3
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGCATATGAAACTTCTAAAATGTACCGTGACTTTAAGTTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTACTACCACAGGAGCATGTGTATGATAAGATCAATGGCGTATGGAATCTGTCCAGCGACCAG
Seq A exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCCAATATGAATGACAGTTTTAATGTCAGCATACCATATCTGCAAATT
Seq C2 exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.4=100)
A:
PF072896=DUF1448=FE(15.3=100)
C2:
PF072896=DUF1448=FE(77.8=100),PF072896=DUF1448=PU(1.4=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGACTTTAAGTTGAGAAGTGC
R:
AGCTTTCTATGACAAGCGCCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: