GgaEX0014560 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20138436-20140198:-
Coord C1 exon
chr7:20140063-20140198
Coord A exon
chr7:20139019-20139114
Coord C2 exon
chr7:20138436-20138498
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTATCTTTTCTTTAATAGGGA
3' ss Score
9.44
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
Seq A exon
GGAAATCTGGGAACGTTTTTTATTACTAATGTGAGAGTAGTTTGGCATGCAAATATGAATGACAGCTTTAATGTCAGCATACCATATCTACAAATT
Seq C2 exon
CGTTCAATAAAAGTAAGAGACTCAAAGTTTGGCTTGGCTCTTGTGATAGAGAGTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.4=100)
A:
PF072896=DUF1448=FE(9.3=100)
C2:
PF072896=DUF1448=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAATGTATCGTGATCTGAAGCT
R:
TCACAAGAGCCAAGCCAAACT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]