GgaEX0014560 @ galGal4
Exon Skipping
Gene
ENSGALG00000009846 | BBS5
Description
Bardet-Biedl syndrome 5 protein [Source:RefSeq peptide;Acc:NP_001238960]
Coordinates
chr7:18173536-18176262:-
Coord C1 exon
chr7:18176127-18176262
Coord A exon
chr7:18175083-18175178
Coord C2 exon
chr7:18173536-18173670
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGTATCTTTTCTTTAATAGGGA
3' ss Score
9.44
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
Seq A exon
GGAAATCTGGGAACGTTTTTTATTACTAATGTGAGAGTAGTTTGGCATGCAAATATGAATGACAGCTTTAATGTCAGCATACCATATCTACAAATT
Seq C2 exon
AGTGGAGGATATGTACTTGGTTTTAAAATAGACCCTGTGGAGAAACTACAGGAGGCAGTGAAAGAAATTAATTCACTTCACAAAGTTTATTCAGCTAACCCTATATTTGGAGTGGATTATGAAATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.4=100)
A:
PF072896=DUF1448=FE(9.3=100)
C2:
PF072896=DUF1448=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTGAAGCTGAGAAGTGCA
R:
TGCCTCCTGTAGTTTCTCCACA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]