BtaEX0005341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26806307-26811883:-
Coord C1 exon
chr2:26811788-26811883
Coord A exon
chr2:26807837-26807899
Coord C2 exon
chr2:26806307-26806441
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCATTTTACATCTAGCGG
3' ss Score
6.79
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAAATTTAGGAACCTTTTTTATTACCAATGTGAGAATCGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGTATACCATATCTGCAAATT
Seq A exon
CGGTCAGTAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq C2 exon
AGTGGAGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAACTACAAGAATCAGTTAAGGAGATCAACTCACTTCACAAAGTCTATTCTGCCAATCCTATATTTGGAGTGGATTATGAGATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(9.3=100)
A:
PF072896=DUF1448=FE(6.0=100)
C2:
PF072896=DUF1448=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATCGTGTGGCATGCAA
R:
TGTGAAGTGAGTTGATCTCCTT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development