MmuEX6101954 @ mm10
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69656897-69663160:+
Coord C1 exon
chr2:69656897-69656992
Coord A exon
chr2:69661036-69661098
Coord C2 exon
chr2:69663026-69663160
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCATTTTATACAGCGT
3' ss Score
8.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCCAATATGAATGACAGTTTTAATGTCAGCATACCATATCTGCAAATT
Seq A exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGCAG
Seq C2 exon
AGTGGAGGATACGTCCTTGGCTTTAAAATAGACCCTGTGGAAAAACTACAGGAATCAGTTAAAGAGATCAACTCACTTCACAAAGTCTATTCTGCCAGTCCAATATTTGGAGTGAATTATGAAATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145-'14-22,'14-17,18-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(15.2=100)
A:
PF072896=DUF1448=FE(77.8=100),PF072896=DUF1448=PU(1.4=4.5)
C2:
PF072896=DUF1448=FE(13.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATTGTGTGGCATGCCA
R:
TGTGAAGTGAGTTGATCTCTTTAACT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types