MmuEX6101954 @ mm9
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69494954-69501217:+
Coord C1 exon
chr2:69494954-69495049
Coord A exon
chr2:69499093-69499155
Coord C2 exon
chr2:69501083-69501217
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCATTTTATACAGCGT
3' ss Score
8.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCCAATATGAATGACAGTTTTAATGTCAGCATACCATATCTGCAAATT
Seq A exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGCAG
Seq C2 exon
AGTGGAGGATACGTCCTTGGCTTTAAAATAGACCCTGTGGAAAAACTACAGGAATCAGTTAAAGAGATCAACTCACTTCACAAAGTCTATTCTGCCAGTCCAATATTTGGAGTGAATTATGAAATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(15.3=100)
A:
PF072896=DUF1448=FE(77.8=100),PF072896=DUF1448=PU(1.4=4.5)
C2:
PF072896=DUF1448=FE(13.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATTGTGTGGCATGCCA
R:
TGTGAAGTGAGTTGATCTCTTTAACT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: