RnoEX0014254 @ rn6
Exon Skipping
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55898290-55904700:+
Coord C1 exon
chr3:55898290-55898385
Coord A exon
chr3:55901998-55902060
Coord C2 exon
chr3:55904566-55904700
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCGTTTTTCATTTTATATAGCGT
3' ss Score
7.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGCATACCATACCTGCAAATC
Seq A exon
CGTTCAATAAAGATCAGAGATTCAAAATTTGGCTTGGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq C2 exon
AGTGGAGGATATGTTCTTGGCTTTAAAATAGACCCAGTGGAAAAACTACAGGAATCAGTTAAGGAGATCAACTCACTTCACAAAGTCTATTCTGCCAGCCCGATATTTGGAGTGAATTATGAAATGGAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.8=100)
A:
PF072896=DUF1448=FE(6.0=100)
C2:
PF072896=DUF1448=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCATACCATACCTGCA
R:
CTCCAAATATCGGGCTGGCAG
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]