DreEX0016686 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48590004-48592428:-
Coord C1 exon
chr9:48592333-48592428
Coord A exon
chr9:48592177-48592239
Coord C2 exon
chr9:48590004-48590138
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCAACCCATTTGTTTAAAGCGC
3' ss Score
5.56
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTAATCTTGGGACGTTTTTCATTACTAATGTGAGAATCGTGTGGCATGCCAACATGAACGAGAGCTTTAACGTCAGCATTCCCTATCTGCAAATT
Seq A exon
CGCTCGATAAGGATTAGAGACTCTAAATTTGGACTTGCTCTTGTGATTGAGAGCTCTCAACAG
Seq C2 exon
ACAGGAGGGTATGTTTTGGGATTCAAGATCGATCCAATGGACAAGTTACAGGATGCAGTGAAGGAAATCAACTCCCTGCACAAAGTTTATTCCGCAAACCCTATATTTGGTGTGGAATATGAGATGGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(9.3=100)
A:
PF072896=DUF1448=FE(6.0=100)
C2:
PF072896=DUF1448=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACATGAACGAGAGCTT
R:
GCGGAATAAACTTTGTGCAGGG
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]