BtaEX0005368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14235507-14236754:-
Coord C1 exon
chr3:14236380-14236754
Coord A exon
chr3:14235921-14236095
Coord C2 exon
chr3:14235507-14235634
Length
175 bp
Sequences
Splice sites
3' ss Seq
GGGTCCTCTCTGCCCCTCAGGGG
3' ss Score
7.76
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGGACAGGGCCTTCCGCGTGCGCATCGCGGGCGACGCGCCGCTGCAGGGCGTGCTGGGCGGCGCCCTCACCATCCCATGCCACGTTCACTACCTGCGGCCGTCGCCGAGCCGCCGGGCCGCGCAGGGCTCCCCGCGGGTTAAGTGGACCTTCCTGTCCGGCGGCCGGGAGGCCGAGGTGCTAGTGGCGCGGGGCCTACGCGTCAAGGTGAGCGAGGCCTACCGGTTCCGCGTGGCACTGCCTGCTTACCCGGCGTCACTCACCGACGTCTCCCTGGTGCTGAGTGAGCTGCGGCCCAACGACTCAGGCATTTACCGCTGCGAGGTCCAGCACGGCATCGACGACAGCAGCGACGCGGTGGAGGTCAAGGTCAAAG
Seq A exon
GGGTCGTCTTTCTCTACCGGGAGGGCTCTGCCCGCTACGCTTTCTCCTTCGCTGGGGCCCAGGAGGCCTGTGCCCGCATCGGAGCCCGAATCGCCACTCCGGAGCAGCTCTATGCCGCCTACCTCGGGGGCTATGAACAGTGTGACGCTGGCTGGCTGTCCGACCAGACCGTGAG
Seq C2 exon
GTATCCCATCCAGACGCCACGAGAGGCCTGTTATGGAGACATGGATGGCTTCCCTGGGGTCCGGAACTACGGAGTGGTCGACCCCGATGACCTCTATGATGTTTACTGTTATGCTGAAGAACTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789-'5-10,'5-8,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PD(97.6=98.4),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGTGAGCGAGGCCTAC
R:
GGTCGACCACTCCGTAGTTCC
Band lengths:
257-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development