RnoEX0014316 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187368459-187369652:-
Coord C1 exon
chr2:187369281-187369652
Coord A exon
chr2:187368827-187369001
Coord C2 exon
chr2:187368459-187368586
Length
175 bp
Sequences
Splice sites
3' ss Seq
GAGTTCTCTCTGCTCCTCAGGGG
3' ss Score
7.01
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGGATCGAGCCTTTCGGGTGCGCATCGGTGCCGCGCAGCTGCGGGGTGTGCTGGGCGGTGCCCTGGCCATCCCATGCCACGTCCACCACCTGAGGCCGCCGCCCAGCCGCCGGGCCGCGCCGGGCTTTCCCCGAGTCAAATGGACCTTCCTGTCCGGGGACCGGGAGGTGGAGGTGCTGGTGGCGCGCGGGCTGCGCGTCAAGGTAAACGAAGCCTATCGGTTCCGCGTGGCGCTGCCTGCCTACCCCGCATCGCTCACAGATGTGTCTTTAGTATTGAGCGAACTGCGGCCCAATGATTCCGGGGTCTATCGCTGCGAGGTCCAGCACGGTATCGACGACAGCAGTGATGCTGTGGAAGTCAAGGTCAAAG
Seq A exon
GGGTCGTCTTCCTCTACCGAGAGGGCTCTGCCCGCTATGCTTTCTCCTTCGCTGGAGCCCAGGAAGCCTGTGCTCGCATCGGAGCCCGAATTGCCACCCCTGAGCAGCTGTATGCTGCCTACCTCGGCGGCTATGAACAGTGTGATGCTGGCTGGCTGTCCGACCAAACCGTGAG
Seq C2 exon
GTACCCCATCCAGAACCCACGAGAAGCCTGTTATGGAGACATGGATGGCTACCCTGGAGTGCGGAATTACGGAGTGGTGGGTCCTGATGATCTCTACGATGTCTACTGTTATGCCGAAGACCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'8-14,'8-12,9-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PD(87.2=98.4),PF073547=Sp38=PU(56.0=33.6),PF0019312=Xlink=PU(0.1=0.0)
A:
PF073547=Sp38=PD(42.7=54.2),PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAAGGTAAACGAAGCCT
R:
CACTCCGTAATTCCGCACTCC
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]