DreEX0016721 @ danRer10
Exon Skipping
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29390569-29396183:-
Coord C1 exon
chr16:29395803-29396183
Coord A exon
chr16:29393839-29394013
Coord C2 exon
chr16:29390569-29390696
Length
175 bp
Sequences
Splice sites
3' ss Seq
GATTCTCAGCATGTTCTTAGGGG
3' ss Score
0.95
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGATTCTTCAGCCTTAAAAGTGGCCATTCCTGCCAGCTCACCAGTGTCTGCTGTTTTGGGTGGCTCTTTGACGCTGCCCTGCCTGGTGAGTCTTCCCCGTACGCCATCTTTGGGTCGACATGCAGTATTGACGCAGCCACGGGTCAAATGGAGCTTTCTTTCATCAGACAGAGAGACAGAGATTCTGGTGGCCCGTGGTGAGCGGGTTAAGGTGAGTGAGGCTTATAAAGGCAGAGCGTCGCTGCTCAATTACGCTACCTCTTCAGCTGATCTCACCCTCAGACTGGAGGGATTGATTCACAACGACACAGGTTTCTACCGGTGCGAGGTCCAGCATGGCCTGGAGGACTCACATGACCAGGCTCAAGTCAAAGTTAAGG
Seq A exon
GGGTTGTCTTCCTCTACCGCCATACCTCGAGTCGCTATGCCTTCACTTTTGATGAGGCCAGAGATGCGTGTAAGGACATCGGAGCTGAGATTGCTTCTCCAGAGCAGCTGCTGGCTGCCTATCACAGCGGTTATGAGCAGTGTGATGCTGGCTGGCTTTCAGATCGCTCCGTCAG
Seq C2 exon
ATACCCGATCCAGATGCCTCGGGAAGGGTGTTTTGGAGATATGGATGGATTACCAGGCGTTCGTAACTACGGCACGATGGAGAACGATGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=FE(95.5=100),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0768612=V-set=PD(0.8=1.7),PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGGGTTAAGGTGAGTG
R:
CGAACGCCTGGTAATCCATCC
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]