MmuEX6071871 @ mm9
Exon Skipping
Gene
ENSMUSG00000004892 | Bcan
Description
brevican [Source:MGI Symbol;Acc:MGI:1096385]
Coordinates
chr3:87800040-87801278:-
Coord C1 exon
chr3:87800907-87801278
Coord A exon
chr3:87800461-87800635
Coord C2 exon
chr3:87800040-87800167
Length
175 bp
Sequences
Splice sites
3' ss Seq
GAGTTATTTCTTCTCCGCAGGGG
3' ss Score
9.7
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGGATCGAGCCTTCCGCGTGCGCATCGGTGCCACGCAGCTGCGGGGCGTGCTGGGCGGTGCCCTGGCCATCCCATGCCACGTCCACCACCTGCGGCCGCCGCACAGTCGCCGGGCCGCGCCGGGTTTTCCCCGGGTCAAGTGGACCTTCCTGTCCGGGGACCGGGAGGTAGAGGTACTGGTGGCTCGTGGGCTGCGCGTCAAGGTAAACGAAGCCTACCGGTTCCGCGTGGCGCTGCCTGCCTACCCCGCATCGCTCACGGATGTGTCTCTAGTATTGAGCGAACTGCGGCCCAATGATTCCGGGGTCTATCGCTGCGAGGTCCAGCACGGTATCGACGACAGCAGTGATGCTGTGGAGGTCAAGGTCAAAG
Seq A exon
GGGTCGTCTTCCTCTACAGAGAGGGCTCTGCGCGCTATGCTTTCTCCTTTGCTGGAGCCCAGGAAGCCTGCGCTCGCATAGGAGCCCGAATCGCCACCCCGGAGCAGCTCTATGCTGCCTACCTCGGCGGCTATGAGCAGTGTGATGCAGGCTGGCTGTCCGACCAAACTGTGAG
Seq C2 exon
GTACCCCATCCAGAACCCACGAGAGGCCTGCTCTGGAGACATGGATGGCTATCCTGGCGTGCGGAACTACGGAGTGGTGGGTCCTGATGATCTCTATGATGTCTACTGTTATGCCGAAGACCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004892-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PD(87.9=98.4),PF073547=Sp38=PU(56.0=33.6),PF0019312=Xlink=PU(0.1=0.0)
A:
PF073547=Sp38=PD(42.7=54.2),PF0019312=Xlink=PU(60.4=98.3)
C2:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGGTAGAGGTACTGGTG
R:
CATCCATGTCTCCAGAGCAGG
Band lengths:
258-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: