BtaEX0006600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285305-106286134:-
Coord C1 exon
chr11:106285998-106286134
Coord A exon
chr11:106285824-106285894
Coord C2 exon
chr11:106285305-106285756
Length
71 bp
Sequences
Splice sites
3' ss Seq
CATGATGGCCGTGCCCCCAGGGA
3' ss Score
7.25
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TTCTCAGGGACCTGGCTCCTGGTGGCCGTGGCCTCCCCATGTCGCTACCTGCAGGAGCAGGGCCATCGGGCTGAGGCCACCACTCTGCACGTGGCTCCTCAGGGCTCAGCCATGGTTGTCAGCACCTTCCGAAAGCT
Seq A exon
GGATGGAATCTGCTGGGCAGTGCGGCAGCTGTACGGAGACACGGGACGCCCAGGGCGCTTCCTGCTCCAAG
Seq C2 exon
CCCGGGGCGCCCGCGGGCCGGTGGACGTGGTCGTCGGGGACACGGACTACCGCGGCTTTGCCGTCTTGTACCTGGAGAGGGCGCGGCAGCTGTCGGTGAAGCTGTACGGTACGTCCTGGGGCCCTGGGGCCCGGGTCTGCTGCGCCCGCAGGGCTGTTGGGTGGGCTGGGTGGGCCCTCTCCTCCCTCCCGCCTGCCCCTGCTCTTCAGCCCAAATGTGGGGACAGAACGGGACGGGGAAGCGGGGCAGCAGGGGTCAGATCGCAGCCCGAGGCACACAGCCCAGCCCCCAGAGCGCCCTGCAGGCCCCTGCCCCGTGGGTGCCCAGGAGCCCGTGTGTCCTGCACGCAGTCCGCTCGCTCCCTGTGAGCGATTCCTTCCTGAGTGTGTTTGAGCAGCGGGTCCAGGGGGCCAACCTGACCGAGGACCACACCCTGTTCTTCCCCAAGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.040 C2=0.279
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(40.7=95.7)
A:
PF0006118=Lipocalin=FE(22.2=100)
C2:
PF0006118=Lipocalin=PD(36.1=31.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCGCTACCTGCAGGAG
R:
TCTCCAGGTACAAGACGGCAA
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development