DreEX0017831 @ danRer10
Exon Skipping
Gene
ENSDARG00000032098 | c8g
Description
complement component 8, gamma polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-1898]
Coordinates
chr24:16888382-16890841:-
Coord C1 exon
chr24:16890705-16890841
Coord A exon
chr24:16889376-16889446
Coord C2 exon
chr24:16888382-16888489
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTTTCCAAATGTAAGCAA
3' ss Score
-0.88
5' ss Seq
AAGGCATGT
5' ss Score
2.03
Exon sequences
Seq C1 exon
ATGAGTGGCAAGTGGCACCTGCTCACAGTGGCTTCTCGGTGTAAGAATCTCCTGGAGAGCGGCTTTAAAACGGAGAGCACGAGCCTCACCTGGAACATTACTGCGGACACTGTGACTGTGGGCACCGTGAGAAAACT
Seq A exon
CAATTTCGTGTGCTGGGAGATCAAGCAGAACTACATGAAAACGAAAACCCCTGGGCAGCTCTTCCTCAAAG
Seq C2 exon
GCAAGAGACCGTCTGACAATGTGGACATAATGGTGCTCGAGACGGACTACAGCACATATGCTATGCTGGTTTTTAAGAGAGCAGAGAAAATTACTATGAAACTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032098-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.9=95.7)
A:
PF0006118=Lipocalin=FE(17.4=100)
C2:
PF0006118=Lipocalin=FE(26.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGTGGCTTCTCGGTGTA
R:
ATGTGCTGTAGTCCGTCTCGA
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]