GgaEX6014683 @ galGal3
Exon Skipping
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:895039-896245:-
Coord C1 exon
chr17:896106-896245
Coord A exon
chr17:895471-895541
Coord C2 exon
chr17:895039-895146
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCTCCCTGCACAGGGA
3' ss Score
10.72
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
Seq A exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAG
Seq C2 exon
GCCGTGGTTACAACAGCAAGATGGAGGTGGTGGTGGGAGAGGCGGACCCCCGCAGCTATGCCATCATCTACTACCAGGACAGCCAAGGCCTCTCTGTCAAGCTCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(32.6=97.8)
A:
PF0006118=Lipocalin=FE(17.4=100)
C2:
PF0006118=Lipocalin=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTACCTGGCAGAGAACAG
R:
TGTCCTGGTAGTAGATGATGGCA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]