RnoEX6015864 @ rn6
Exon Skipping
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2725343-2725920:-
Coord C1 exon
chr3:2725784-2725920
Coord A exon
chr3:2725534-2725604
Coord C2 exon
chr3:2725343-2725450
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTCCCCTGCCCAGAGA
3' ss Score
8.14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TTTGCAGGGACATGGCTCCTTGTGGCTGTGGGCTCTGCATGCCGCTTTCTTCAGGAGCAGGGACACCGGGCTGAGGCCACTACATTGCACATAGCTCCCCAGGGTGCAGCTATGGCTGCCAGCACCTTCCGAAAGCT
Seq A exon
AGACGGGATCTGCTGGCAGGTGCGCCAACTCTATGGAATCACAGGGGTCCCTGGCCGCTTCTTGCTCCAAG
Seq C2 exon
CTCCACGGGCCCGTGGGCCAGTACATGTGGTTGTTGCTGAGACCGACTACCAGAGCTTTGCCATCCTGTATCTGGAGCAGGCGAGGAGGCTGTCTGTGAAACTATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701-'11-2,'11-1,12-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.7=95.7)
A:
PF0006118=Lipocalin=FE(17.3=100)
C2:
PF0006118=Lipocalin=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTCAGGAGCAGGGAC
R:
TGCTCCAGATACAGGATGGCA
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]