BtaEX0006796 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46690773-46711729:-
Coord C1 exon
chr22:46711712-46711729
Coord A exon
chr22:46692103-46692174
Coord C2 exon
chr22:46690773-46690853
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTTCTCCATCCAGCTT
3' ss Score
8.95
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTCCCTCAGGCACAAAAG
Seq A exon
CTTGCTGATGATCAGGGCCCCGTCCTGATGACCACGGTCGCCATGCCTGTGTTTAGTAAGCAGAATGAGACT
Seq C2 exon
AGATCAAAAGGCATTCTTCTCGGTGTGGTCGGCACAGATGTCCCAGTGAAAGAACTTCTGAAGACCATCCCCAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'9-11,'9-10,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(5.1=100)
A:
PF0274313=Cache_1=FE(23.5=100)
C2:
PF0274313=Cache_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development