MmuEX6040211 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29103666-29124683:-
Coord C1 exon
chr14:29124666-29124683
Coord A exon
chr14:29104954-29105025
Coord C2 exon
chr14:29103666-29103746
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTGTCTCCATCCAGCTT
3' ss Score
10.38
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTCCCTCAGGCTCAAAAG
Seq A exon
CTTGCTGATGATCAGGGCCTCGTCTTGATGACCACGGTGGCCATGCCTGTGTTTAGTAAGCAGAACGAAACT
Seq C2 exon
AGGTCAAAGGGCATTCTTCTGGGTGTGGTTGGCACAGATGTCCCAGTTAAAGAGCTTCTGAAGACCATCCCCAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'36-44,'36-43,37-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(5.1=100)
A:
PF0274313=Cache_1=FE(23.5=100)
C2:
PF0274313=Cache_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types