RnoEX0016121 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5166031-5237130:-
Coord C1 exon
chr16:5236997-5237130
Coord A exon
chr16:5167357-5167428
Coord C2 exon
chr16:5166031-5166111
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTGTCTCCATCCAGCTT
3' ss Score
10.38
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGATGTGCAGGAAAATGTCATGGAATACCTCCATGTACTCAGTCGACCCAAAGTCATCGACCAGGAACATGATGTGGTGTGGACCGAAGCGTACATCGACAGCACT
Seq A exon
CTTGCTGATGATCAGGGCCTCGTCTTGATGACCACAGTGGCCATGCCTGTGTTTAGTAAGCAGAACGAAACT
Seq C2 exon
AGGTCAAAGGGCATTCTTCTGGGTGTGGTTGGCACAGATGTCCCAGTAAAAGAGCTTCTGAAGACCATCCCCAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'22-29,'22-28,24-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.7=17.8)
A:
PF0274313=Cache_1=FE(25.0=100)
C2:
PF0274313=Cache_1=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGATGTGCAGGAAAATGT
R:
TGGGGATGGTCTTCAGAAGCT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]