BtaEX0006798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46649756-46651591:-
Coord C1 exon
chr22:46651520-46651591
Coord A exon
chr22:46651197-46651258
Coord C2 exon
chr22:46649756-46649823
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTCAATCTAGAAA
3' ss Score
8.85
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TTAAGAAATGCCATGGTGAATAGAAAGACCGGGAAGTTTTCCATGGAGGTGAAGAAGACAGTGGACAAAGGG
Seq A exon
AAACGGGTTTTGGTGATGACAAATGACTACTATTATACAGACATCAAGGGTACTCCTTTCAG
Seq C2 exon
TTTAGGTGTGGCGCTCTCCAGAGGCCATGGGAAATATTTCTTCCGAGGGAATGTAACTATTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGGTGAATAGAAAGACCG
R:
CTTCTTCAATAGTTACATTCCCTCGG
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development