RnoEX0016134 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5124746-5126480:-
Coord C1 exon
chr16:5126409-5126480
Coord A exon
chr16:5126087-5126148
Coord C2 exon
chr16:5124746-5124813
Length
62 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCCCCCCTGATCTAGAAA
3' ss Score
8.5
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TTACGAAATGCCATGGTGAATCGGAAGACTGGGAAATTCTCCATGGAAGTGAAGAAGACTGTGGACAAAGGG
Seq A exon
AAACGGGTTTTGGTGATGACCAATGACTACTACTACACAGACATCAAGGGTGCTCCTTTCAG
Seq C2 exon
TTTAGGTGTGGCGCTCTCCAGGGGCCACGGGAAATACTTCTTCCGAGGGAATGTAACCATTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGCCATGGTGAATCGG
R:
TCAATGGTTACATTCCCTCGGA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]