GgaEX1012527 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7871622-7873841:+
Coord C1 exon
chr12:7871622-7871693
Coord A exon
chr12:7871946-7872007
Coord C2 exon
chr12:7873774-7873841
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGTTCCGAATCTAGAAA
3' ss Score
7.36
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
CTTCGAAATGCAATGGTGAATCGTAAAACAGGAAAATTCTCCATGGAAGTGAAGAAAACAGTGGACAAAGGG
Seq A exon
AAACGGGTATTGGTGATGACAAATGACTACTATTATACAGACATCAAGGGTACTCCATTCAG
Seq C2 exon
TTTAGGTGTGGCTCTCTCTAGAGGACATGGAAAATATTTCTTCAGAGGGAATGTAACTGTGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAATGCAATGGTGAATCGT
R:
TCCACAGTTACATTCCCTCTGA
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]