BtaEX0006812 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31120316-31120876:-
Coord C1 exon
chr5:31120812-31120876
Coord A exon
chr5:31120594-31120613
Coord C2 exon
chr5:31120316-31120396
Length
20 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.95
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGATCTGGGAACCCATCCAGCCTGAGTGACATTGGCAGCCGACGCTCCCCACCTCCATCTCTAG
Seq A exon
CCAAGCAGAAGCAAAAGCAG
Seq C2 exon
GCGGAACATATTCCTCCATATGACGTGGTACCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGTGACATTGGCAGCC
R:
TTTCAGAGAGGGTCCCACCAG
Band lengths:
116-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development