DreEX0018232 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14397884-14400624:+
Coord C1 exon
chr23:14397884-14397963
Coord A exon
chr23:14398243-14398262
Coord C2 exon
chr23:14400544-14400624
Length
20 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTTATTTTCTAAAGCCA
3' ss Score
5.43
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAAAAGCGGTAACTCATCCTCAAGCCTGGGTGACATGGTTTCAGGGGGTTGGAGATCCACACCGCCATCTGCAGGTGAGA
Seq A exon
CCAAACAGAAGCTAAAGCAG
Seq C2 exon
ACTGAACACATTCCTCCATATGATGTGGTGCCATCCATGAGGCCTGTGGTTCTGGTAGGACCGTCACTAAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=1.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.4=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTGGGTGACATGGTTT
R:
GAACCACAGGCCTCATGGATG
Band lengths:
112-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]