RnoEX0016181 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140321029-140321576:+
Coord C1 exon
chr7:140321029-140321093
Coord A exon
chr7:140321282-140321301
Coord C2 exon
chr7:140321496-140321576
Length
20 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.95
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGATCCGGGAACCCTTCCAGCCTGAGTGACATTGGCAACCGACGTTCCCCTCCTCCATCTCTAG
Seq A exon
CCAAGCAGAAGCAAAAGCAG
Seq C2 exon
GCGGAACATGTCCCCCCGTATGATGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-'14-19,'14-14,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGACATTGGCAACCGA
R:
TTTCAGAGAGGGTCCCACCAG
Band lengths:
115-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]