MmuEX0008842 @ mm10
Exon Skipping
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98640686-98641257:+
Coord C1 exon
chr15:98640686-98640750
Coord A exon
chr15:98640959-98640978
Coord C2 exon
chr15:98641177-98641257
Length
20 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.95
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGATCTGGGAACCCTTCCAGCCTGGGTGACATTGGCAACCGACGCTCTCCTCCTCCGTCTCTAG
Seq A exon
CCAAGCAGAAGCAAAAGCAG
Seq C2 exon
GCGGAACATGTTCCCCCGTATGATGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-'15-21,'15-16,17-21
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTGACATTGGCAACC
R:
TTTCAGAGAGGGTCCCACCAG
Band lengths:
116-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types