BtaEX0008042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52247261-52252375:+
Coord C1 exon
chr22:52247261-52247362
Coord A exon
chr22:52249875-52249994
Coord C2 exon
chr22:52252244-52252375
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCATGCATACTGTCTTGCAGCAA
3' ss Score
7.67
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CAGAAGCTCTTGGGGTGTAGCCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGATGTCTTTCAGCTGATTGACCAGGATGAGAACAAGGAAAAT
Seq A exon
CAAGTCTTTGAGTTTAAGAAGCCAATAAGACCTGCATCTCGAGGCTGCCTACATGTTCACGGACTGGAGGAGGGTAAAGATGTCTTCACACAGAGGCAGAACTCCGCCCCAGCTCGGATG
Seq C2 exon
CTTTCCTCAAATGAAAGAGATGGCAATGAACCAGGGAATTCCATTCCTTTTATGCCCCAGTCACCTGTGACTCCCACTTTGTCTGATGAGGATGATGGCTTCATGGATCTTCTTGATGGAGAGAATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586_MULTIEX1-5/11=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.625 C2=1.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.4=100)
A:
PF066178=M-inducer_phosp=FE(15.9=100)
C2:
PF066178=M-inducer_phosp=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCTCTTGGGGTGTAGC
R:
CTTCAAATTCTCTCCATCAAGAAGA
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development