MmuEX0010349 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109879834-109883614:+
Coord C1 exon
chr9:109879834-109879935
Coord A exon
chr9:109881473-109881577
Coord C2 exon
chr9:109883489-109883614
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAAATATGTTGTTTTGCAGGAA
3' ss Score
9.46
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAGAAGCTCCTGGGATGTAGCCCAGCCCTGAAGAGGAGCCACTCTGATTCTCTAGACCACGACACCTTTCACCTCATCGACCAGGATGAAAATAAAGAAAAT
Seq A exon
GAAGCATTTGAATTTAAAAAGCCAATACGACCTGCATCTCGTCACATCTACGAGGAGAGTAAAGATCCCTTTACACACAGGCAGAATTCAGCCCCAGCTCGGATG
Seq C2 exon
CTATCTTCAAATGAAAGTGAATCAGGAAATTTCAGTCCTCTTTTTATACCCCAGTCACCTGTAAAAGCCACTTTGTCCGATGAGGATGATGGCTTCATAGACCTTCTGGATGGCGAGAATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.829 C2=0.893
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(14.0=100)
A:
PF066178=M-inducer_phosp=FE(14.5=100)
C2:
PF066178=M-inducer_phosp=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCTCCTGGGATGTAGC
R:
TCATATTCTCGCCATCCAGAAGG
Band lengths:
226-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types