GgaEX0006750 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:571174-573026:+
Coord C1 exon
chr2:571174-571275
Coord A exon
chr2:572107-572223
Coord C2 exon
chr2:572892-573026
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTCTTCAATTCAGGAA
3' ss Score
10.74
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CAAAGGCTCCTGGGCTCCAGTCCTGCTCTGAAGAGAAGCCATTCGGATTCCACGGATTGTAATGCTTTTCAGCTCCTAGAACAGAATGAAAATAAGGAGAAT
Seq A exon
GAATCATTTGAGTTTAAGAAGCCAGCCAAGCCAGCTTCTCGGGGTTCTGTGCACGTCCACTCACACGATGGCAAAAGTGTTCTTGGACAAAGGCAGAACTCGGCCCTGGCTCAGGGA
Seq C2 exon
TTTCCCACTCAAGAAATGCCCACGGGTGAACTGGAAAACTACGGGCCAGCTTTCCTGCAGCAGTCTTCTCTGACTTCCTCTGAAAGCGAAGATGACGACGGATTCCTGGAGCTCTTAGATGAGCAAGATCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.4=100)
A:
PF066178=M-inducer_phosp=FE(15.4=100)
C2:
PF066178=M-inducer_phosp=PU(26.4=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGTCCTGCTCTGAAGA
R:
CATCTAAGAGCTCCAGGAATCCG
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]