GgaEX0006750 @ galGal3
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:477378-479230:+
Coord C1 exon
chr2:477378-477479
Coord A exon
chr2:478311-478427
Coord C2 exon
chr2:479096-479230
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTCTTCAATTCAGGAA
3' ss Score
10.74
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CAAAGGCTCCTGGGCTCCAGTCCTGCTCTGAAGAGAAGCCATTCGGATTCCACGGATTGTAATGCTTTTCAGCTCCTAGAACAGAATGAAAATAAGGAGAAT
Seq A exon
GAATCATTTGAGTTTAAGAAGCCAGCCAAGCCAGCTTCTCGGGGTTCTGTGCACGTCCACTCACACGATGGCAAAAGTGTTCTTGGACAAAGGCAGAACTCGGCCCTGGCTCAGGGA
Seq C2 exon
TTTCCCACTCAAGAAATGCCCACGGGTGAACTGGAAAACTACGGGCCAGCTTTCCTGCAGCAGTCTTCTCTGACTTCCTCTGAAAGCGAAGATGACGACGGATTCCTGGAGCTCTTAGATGAGCAAGATCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'10-12,'10-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.3=100)
A:
PF066178=M-inducer_phosp=FE(15.3=100)
C2:
PF066178=M-inducer_phosp=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGTCCTGCTCTGAAGA
R:
CATCTAAGAGCTCCAGGAATCCG
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]