RnoEX0018899 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117957488-117961217:+
Coord C1 exon
chr8:117957488-117957589
Coord A exon
chr8:117959371-117959490
Coord C2 exon
chr8:117961083-117961217
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCAAATTTATTGTTTTGCAGGAA
3' ss Score
9.38
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAGAAGCTCTTGGGGTGTAGCCCAGCGCTAAAGAGGAGCCATTCTGATTCTCTAGACCACGACATCTTTCAACTCATTGACCAGGATGAAAATAAAGAAAAT
Seq A exon
GAAGCATTTGAATTTAAAAAGCCAATAAGACCTGCATCTCGTGGCTGCCTGAATGCTCACGTTCACGAGGAAAGTAAGGACCCCTTTACACACAGGCAGAATTCAGCCCCAGCTCGGATG
Seq C2 exon
CTGTCTTCAAATGAAAGTGACATTAGTGAATCAGGAAATTTCAGTCCTCTTTTTACACCCCAGTCACCTGTGAAAGCCACTTTGTCTGATGAGGATGATGGCTTCATAGACCTTCTGGATGGAGAGAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.750 C2=0.933
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(13.5=100)
A:
PF066178=M-inducer_phosp=FE(15.9=100)
C2:
PF066178=M-inducer_phosp=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCTCTTGGGGTGTAGC
R:
TCAGATTCTCTCCATCCAGAAGGT
Band lengths:
235-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]