GgaEX1013952 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:570776-572223:+
Coord C1 exon
chr2:570776-570812
Coord A exon
chr2:571174-571275
Coord C2 exon
chr2:572107-572223
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGTCTGATTGTATAGCAA
3' ss Score
6.59
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CCTCCGACTGCCTCTCAGAAGAATACATTCACTGCCG
Seq A exon
CAAAGGCTCCTGGGCTCCAGTCCTGCTCTGAAGAGAAGCCATTCGGATTCCACGGATTGTAATGCTTTTCAGCTCCTAGAACAGAATGAAAATAAGGAGAAT
Seq C2 exon
GAATCATTTGAGTTTAAGAAGCCAGCCAAGCCAGCTTCTCGGGGTTCTGTGCACGTCCACTCACACGATGGCAAAAGTGTTCTTGGACAAAGGCAGAACTCGGCCCTGGCTCAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'10-14,'10-11,11-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.912 C2=1.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.9=100)
A:
PF066178=M-inducer_phosp=FE(13.4=100)
C2:
PF066178=M-inducer_phosp=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACTGCCTCTCAGAAGA
R:
GAGCCAGGGCCGAGTTCT
Band lengths:
148-250
Functional annotations
There are 1 annotated functions for this event
PMID: 12411508
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, detection by mass spectrometry, inhibitor, protein kinase assay. ELM ID: ELMI003208; ELM sequence: LGCSPALK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]