BtaEX0008081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30804190-30810681:-
Coord C1 exon
chr16:30810548-30810681
Coord A exon
chr16:30804560-30804802
Coord C2 exon
chr16:30804190-30804300
Length
243 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTACAAAACTGTAGGAA
3' ss Score
6.71
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AATCAAGTCACTTGGAACAGCAACTTGAAGAAGCTAATTCTGTGAGGCAAGAATTAGATGATGCTTTTAGACAAATCAAGGCTTATGAAAAACAAATCAAGACATTACAACAAGAAAGGGAAGAATTAAATAAG
Seq A exon
GAACTAGTCCAGGCTAGTGAGCGATTAAAAAACCAATCCAAAGAGCTGAAAGACGCACACTGTCAGAGGAAACTGGCCATGCAGGAATTCATGGAGATCAATGAGCGGCTAACAGAATTGCACACCCAAAAACAGAAACTTGCTCGCCATGTCCGAGATAAGGAAGAAGAGGTGGACCTGGTGATGCAAAAAGTTGAAAGCTTAAGGCAAGAACTGCGCAGAACAGAAAGAGCCAAAAAAGAG
Seq C2 exon
CTGGAAGTTCGTACAGAAGCTGTGGCTGCTGAAGCATCTAAAGACAGGAAATTGCGTGAACAGAGTGAGCACTATTCTAAGCAACTGGAGAATGAACTAGAGGGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.543 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAGTCACTTGGAACAGCA
R:
TTCAGTCCCTCTAGTTCATTCTCCA
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development