HsaEX0014063 @ hg38
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr1:227112312-227119937:-
Coord C1 exon
chr1:227119804-227119937
Coord A exon
chr1:227112671-227112913
Coord C2 exon
chr1:227112312-227112422
Length
243 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTACAAAACTGTAGGAA
3' ss Score
6.71
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AATCAAGTCATTTGGAACAGCAACTTGAAGAAGCTAATGCTGTGAGGCAAGAACTAGATGATGCTTTTAGACAAATCAAGGCTTATGAAAAACAAATCAAAACGTTACAACAAGAAAGAGAAGATCTAAATAAG
Seq A exon
GAACTAGTCCAGGCTAGTGAGCGATTAAAAAACCAATCCAAAGAGCTGAAAGACGCACACTGTCAGAGGAAACTGGCCATGCAGGAATTCATGGAGATCAATGAGCGGCTAACAGAATTGCACACCCAAAAACAGAAACTTGCTCGCCATGTCCGAGATAAGGAAGAAGAGGTGGACCTGGTGATGCAAAAAGTTGAAAGCTTAAGGCAAGAACTGCGCAGAACAGAAAGAGCCAAAAAAGAG
Seq C2 exon
CTGGAAGTTCATACAGAAGCTCTAGCTGCTGAAGCATCTAAAGACAGGAAGCTACGTGAACAGAGTGAGCACTATTCTAAGCAACTGGAAAATGAATTGGAGGGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=0.545 C2=0.841
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.4=100)
A:
PF0157614=Myosin_tail_1=FE(24.4=100)
C2:
PF0157614=Myosin_tail_1=FE(11.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAGTCATTTGGAACAGCAACT
R:
TTCAGTCCCTCCAATTCATTTTCCA
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development