GgaEX0013455 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13280983-13283285:+
Coord C1 exon
chr3:13280983-13281116
Coord A exon
chr3:13282687-13282929
Coord C2 exon
chr3:13283175-13283285
Length
243 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTTTAAACTGTAGGAA
3' ss Score
8.66
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATTCTGGACATCTAGAACAGCAACTTGAAGAGGCCAGCACTGCAAGGCGGGAGTTGGACGATGCTTCCAGACAAATAAAGGCTTTTGAGAAACAGGTTAGAACACTGAAGCAAGAGAGGGAAGATCTTAATAAG
Seq A exon
GAACTGGCAGAGTCTAGTGACAGATTAAAATCTCAAGCCAAAGAGCTGAAAGATGCACACAGCCAGCGGAAATTGGCAATGCAGGAGTTCTCAGAGATGAACGAGCGGCTGACAGACTTGCACTCTCAAAAACAAAAGCTTGCCCGCCAGCTCCGAGATAAGGAAGAAGAAATGGAAGTGGTGATGCAAAAAGTAGAAAGTTTAAGGCAAGAGTTACGCAGAACAGAGAGACTTAAAAAAGAA
Seq C2 exon
CTGGAAGTCCAAGCTGAAGCTGCGGCTGCTGAGGCATCCAAAGACAGGAAATTGCGAGAGCGGAGTGAGCAGTACTCTAAGCAGCTGGAAAGTGAAGTAGAGGGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=0.852 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGACATCTAGAACAGCAACT
R:
CTTTAGCCCCTCTACTTCACTTTCC
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]