DreEX6052908 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8268964-8270757:+
Coord C1 exon
chr17:8268964-8269097
Coord A exon
chr17:8270173-8270415
Coord C2 exon
chr17:8270647-8270757
Length
243 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTTTTTCCACCAGCGT
3' ss Score
8.41
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATACAGGACAGGTGGAGCAGCAGCTGGAACAAGCCATTTCTGCACGCAGTGATATGGAGGACTCCTCCAAACAGATCCGGTCTCTGGAAAAACAGCTCAAGAGCACAAAGCAGGAGAGAGATGACCTGCAGAAG
Seq A exon
CGTCTGCAGGAGTCCTCAGACAAGCAGAAAGTTCAGGGGAAGGAGCTGAAGGAGGCCGACAGTCAGAGGAAAATGGCCATGCAGGAGTTTGCGGAGGTGAGCGAGAAAGTGACGGAGCTGAGGTCACTCAAACAGCGTCTGACCCGACAGCTACGGGACAAAGAGGAGGAGCTGGATTCACTCAATCAGAAGGTGGAGGCGCTTCGGCTGGATGTGCGCAAAGCAGAGAGAGCCAAGAAAGAG
Seq C2 exon
ATGGAGGTCCAGGCTGAAGAGTGGTCTGCTGAGGCTCAGAAAGAGAAGAAGTTGAGGGAGCGCAGCGAGCAGTTCAGCAGACAGCTGGAAGAAGAGCTGGACAGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.753 C2=0.919
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(23.7=100)
A:
PF0157614=Myosin_tail_1=PD(37.6=86.4),PF0157614=Myosin_tail_1=PU(16.2=51.9)
C2:
PF0157614=Myosin_tail_1=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGGACAGGTGGAGCAGC
R:
CTGTCCAGCTCTTCTTCCAGC
Band lengths:
238-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]