BtaEX0008083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30852567-30889811:-
Coord C1 exon
chr16:30889716-30889811
Coord A exon
chr16:30873113-30873261
Coord C2 exon
chr16:30852567-30852660
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTTATATTTTCATTCCTAGTAC
3' ss Score
8.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACAGCATGTTTTCGTGAAGAAAGGGATGTGTTAGTGAATGGAGACAATAAATGGATTACAACTTTGCATTATGCTTTCCAGGATGACAATAACTTA
Seq A exon
TACCTGGTTATGGATTATTATGTTGGTGGGGATTTGCTTACTCTACTCAGCAAATTTGAAGATAGATTGCCTGAAGACATGGCTCGATTTTACTTGGCTGAGATGGTGATAGCAATTGATTCAGTTCATCAGCTGCATTATGTACACAG
Seq C2 exon
AGACATCAAACCTGACAATATATTGATGGATATGAATGGACATATTCGGTTAGCAGATTTTGGTTCATGTCTGAAGCTGATGGAAGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATGTTTTCGTGAAGAAA
R:
CGTTCCATCTTCCATCAGCTTCA
Band lengths:
190-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development