RnoEX0018960 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98315834-98340988:+
Coord C1 exon
chr13:98315834-98315929
Coord A exon
chr13:98323284-98323432
Coord C2 exon
chr13:98340895-98340988
Length
149 bp
Sequences
Splice sites
3' ss Seq
CGTTTTATTTTTGTCCACAGTAC
3' ss Score
9.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACAGCGTGCTTTCGTGAAGAGAGGGATGTGTTGGTAAATGGAGACAGTAAGTGGATAACCACTCTGCACTATGCTTTTCAGGATGACAATAACTTA
Seq A exon
TACCTGGTTATGGATTATTATGTTGGTGGGGATTTACTTACTCTGCTCAGCAAATTTGAAGATCGATTGCCAGAAGAGATGGCTCGGTTTTACTTGGCTGAGATGGTGATAGCCATTGACTCAGTTCACCAGCTCCACTATGTTCACAG
Seq C2 exon
AGACATCAAACCTGACAATATATTGATGGATATGAATGGACATATTCGTTTAGCAGATTTTGGTTCTTGTCTGAAGCTGATGGAAGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGCTTTCGTGAAGAGAG
R:
CGTTCCATCTTCCATCAGCTTCA
Band lengths:
188-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]