GgaEX1014015 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13238323-13268676:+
Coord C1 exon
chr3:13238323-13238418
Coord A exon
chr3:13241133-13241281
Coord C2 exon
chr3:13268583-13268676
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTTCCACGTCAAAGTAC
3' ss Score
1.08
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACAGCATGTTTTCGAGAAGAGAGAGATGTGTTAGTGAATGGAGATAACCAGTGGATCACAACATTACATTACGCGTTCCAGGATGAAAACTATTTA
Seq A exon
TACCTGGTTATGGATTATTACGTTGGAGGAGACCTACTGACGTTGCTTAGCAAGTTTGAGGACAGATTACCTGAAGATATGGCTCGATTTTATTTGGCTGAAATGGTGATAGCCATCGATTCTGTGCATCAGTTGCATTATGTCCACAG
Seq C2 exon
GGATATTAAACCAGACAACATCTTGATGGATATGAATGGCCATATTCGATTAGCAGATTTTGGTTCTTGTCTGAAACTGATGGAAGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'3-11,'3-7,4-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATGTTTTCGAGAAGAGAGA
R:
CGTTCCATCTTCCATCAGTTTCA
Band lengths:
190-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]