DreEX6046466 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35240388-35254535:+
Coord C1 exon
chr20:35240388-35240483
Coord A exon
chr20:35241931-35242079
Coord C2 exon
chr20:35254442-35254535
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTCTCCTTCCAGTAC
3' ss Score
11.08
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ACGGCATGTTTTCGGGAGGAGCGGGACGTGCTGGTGAATGGGGACTGTCAGTGGATCACGACATTACACTATGCTTTCCAGGACGAGAACAACTTG
Seq A exon
TACCTGGTGATGGACTACTATGTAGGGGGAGATCTGTTGACTCTGCTTAGTAAGTTTGAAGATCGTCTGCCTGAAGACATGGCCAAGTTCTATCTGGCCGAGATGGTCTTGGCTATTGACTCTGTGCATCAACTACATTATGTCCACAG
Seq C2 exon
AGATATCAAACCAGACAATATCCTGATGGACATGAATGGTCACATCCGGCTGGCTGACTTTGGCTCCTGCCTCAAACTCATGGAAGACGGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATGTTTTCGGGAGGAG
R:
CCCGTCTTCCATGAGTTTGAGG
Band lengths:
186-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]