DreEX6052914 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8209794-8252056:+
Coord C1 exon
chr17:8209794-8209889
Coord A exon
chr17:8219223-8219371
Coord C2 exon
chr17:8251961-8252056
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTCTGTCTTCTACAGTAC
3' ss Score
9.88
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACAGCATGTTTTCGGGAGGAACGGGATGTGCTGGTGAACGGGGACAGTCAGTGGATCACCACACTACACTACGCTTTTCAGGATGACAACTTCCTG
Seq A exon
TACCTGGTGATGGATTACTATGTGGGCGGTGACCTCTTGACTCTCCTCAGCAAGTTTGAGGATCGTTTACCAGAGGACATGGCCCGCTTCTACCTGGCGGAGATGGTTCTGGCCATCGATTCTGTGCATCAGCTCCATTACGTCCACAG
Seq C2 exon
AGACATTAAGCCAGATAACATCCTCATAGATGTGAACGGACATATTCGACTCGCAGATTTCGGCTCCTGTCTGAAACTCACGGAGGATGGAACGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(20.0=100)
A:
PF0006920=Pkinase=FE(31.6=100)
C2:
PF0006920=Pkinase=PD(20.0=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGTTTTCGGGAGGAACG
R:
CGTTCCATCCTCCGTGAGTTT
Band lengths:
188-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]