BtaEX0008973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008028 | CHN1
Description
Bos taurus chimerin (chimaerin) 1 (CHN1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001113247]
Coordinates
chr2:21936116-21954334:+
Coord C1 exon
chr2:21936116-21936171
Coord A exon
chr2:21951821-21951852
Coord C2 exon
chr2:21954221-21954334
Length
32 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTCTTTCCCAATAGGTA
3' ss Score
12.83
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TATATCAACTGCAACAAGAAGCCCCTCATCCTCGGAGAATTACCTGTACTAATGAG
Seq A exon
GTAGAAAATAGACCAAAGTATTACGGAAGAGA
Seq C2 exon
GTTTCACGGCATGATCTCCCGAGAAGCTGCAGACCAGCTCTTGAGTGTAGCTGAGGGGAGCTACCTCATTCGGGAGAGCCAGCGTCAGCCAGGAACCTACACTTTGGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008028-'5-9,'5-6,7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.091 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(0.1=0.0)
C2:
PF0001719=SH2=PU(53.5=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAAGAAGCCCCTCATC
R:
TGGCTCTCCCGAATGAGGTAG
Band lengths:
128-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development