GgaEX1015379 @ galGal3
Exon Skipping
Gene
ENSGALG00000009293 | CHN1
Description
NA
Coordinates
chr7:17892073-17898991:+
Coord C1 exon
chr7:17892073-17892128
Coord A exon
chr7:17897741-17897772
Coord C2 exon
chr7:17898878-17898991
Length
32 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTTTTTTTTTCTAGGTA
3' ss Score
12.65
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TGTATCAGTTGCAACAGGAAGCTCCCCATCCTAGAAGGATAACCTGCACTTGTGAG
Seq A exon
GTAGAGAACCGTCCCAAATATTATGGAAGAGA
Seq C2 exon
ATTTCATGGCATGATCTCAAGGGAAGAAGCTGACCAGTTATTAAGTGTTGCAGAGGGAAGCTATCTCATTCGTGAAAGCCAAAGGCAGCCTGGAACCTACACTTTGGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(0.1=0.0)
C2:
PF0001719=SH2=PU(53.5=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCTCCCCATCCTAGA
R:
GCCTTTGGCTTTCACGAATGA
Band lengths:
128-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]